Source: ALL

Variant Gene DSI v DPI v Chr Position Consequence Alleles Class AF EXOME AF GENOME Disease Score vda EI vda N. PMIDs First Ref. Last Ref.
dbSNP: rs2476601
rs2476601
PTPN22 ; AP4B1-AS1
0.498 0.800 1 113834946 missense variant A/G snv 0.93 0.93
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis 		1.000 0.877 81 2005 2019
dbSNP: rs757123
rs757123
MSI1
1.000 0.120 12 120363020 intron variant A/G snv 0.89 0.88
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis 		0.700 1.000 1 2019 2019
dbSNP: rs3134943
rs3134943
RNF5 ; AGPAT1 ; MIR6833
0.882 0.240 6 32179984 intron variant T/A;C snv 0.89
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis 		0.700 1.000 2 2007 2009
dbSNP: rs2227956
rs2227956
HSPA1L
0.752 0.400 6 31810495 missense variant G/A;C;T snv 0.87
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis 		0.700 1.000 2 2007 2009
dbSNP: rs1036199
rs1036199
HAVCR2
0.925 0.160 5 157104725 missense variant C/A snv 0.87 0.83
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis 		0.020 1.000 2 2011 2019
dbSNP: rs3129888
rs3129888
HLA-DRA
0.882 0.240 6 32443949 intron variant G/A snv 0.82 0.80
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis 		0.700 1.000 1 2011 2011
dbSNP: rs2051600
rs2051600
HLA-DQA2
1.000 0.120 6 32741532 splice region variant A/G snv 0.81 0.81
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis 		0.700 1.000 1 2011 2011
dbSNP: rs3129941
rs3129941
TSBP1 ; TSBP1-AS1
0.882 0.240 6 32369909 missense variant A/G;T snv 0.81
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis 		0.700 1.000 3 2007 2011
dbSNP: rs3129928
rs3129928
TSBP1 ; TSBP1-AS1
1.000 0.120 6 32366464 intron variant G/A;T snv 0.81
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis 		0.700 1.000 1 2011 2011
dbSNP: rs3130617
rs3130617
BAG6 ; C6orf47
0.925 0.200 6 31659746 missense variant C/T snv 0.79 0.74
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis 		0.700 1.000 3 2007 2011
dbSNP: rs2272593
rs2272593
PRRC2A ; MIR6832
1.000 0.120 6 31633567 missense variant T/C snv 0.79 0.74
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis 		0.700 1.000 1 2011 2011
dbSNP: rs1046080
rs1046080
PRRC2A
1.000 0.120 6 31628105 missense variant C/A snv 0.79 0.74
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis 		0.700 1.000 1 2011 2011
dbSNP: rs1042337
rs1042337
HLA-DMB
1.000 0.120 6 32937204 missense variant G/A snv 0.78 0.80
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis 		0.700 1.000 1 2009 2009
dbSNP: rs6962756
rs6962756
ASB15 ; ASB15-AS1
1.000 0.120 7 123616373 missense variant C/T snv 0.77 0.78
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis 		0.700 1.000 1 2009 2009
dbSNP: rs535586
rs535586
CYP21A2 ; EHMT2
0.882 0.160 6 31892560 splice region variant T/A;C snv 0.77
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis 		0.700 1.000 3 2007 2011
dbSNP: rs486416
rs486416
CYP21A2 ; EHMT2
0.925 0.160 6 31888293 intron variant G/A snv 0.77 0.76
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis 		0.700 1.000 1 2011 2011
dbSNP: rs659445
rs659445
C2 ; CYP21A2 ; EHMT2
0.882 0.160 6 31896527 intron variant G/A;C snv 0.77 0.76
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis 		0.700 1.000 3 2007 2011
dbSNP: rs437179
rs437179
CYP21A2 ; SKIV2L
0.882 0.160 6 31961237 missense variant A/C snv 0.76 0.78
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis 		0.700 1.000 2 2007 2009
dbSNP: rs419788
rs419788
CYP21A2 ; SKIV2L ; NELFE
1.000 0.120 6 31961022 intron variant T/A;C snv 0.76
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis 		0.700 1.000 1 2011 2011
dbSNP: rs1799983
rs1799983
NOS3
0.430 0.880 7 150999023 missense variant T/A;G snv 0.75
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis 		0.020 1.000 2 2012 2017
dbSNP: rs1883832
rs1883832
CD40
0.581 0.680 20 46118343 5 prime UTR variant T/C snv 0.75 0.80
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis 		0.730 0.750 4 2012 2017
dbSNP: rs2229113
rs2229113
IL10RA
0.763 0.360 11 117998955 missense variant A/G snv 0.74 0.74
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis 		0.010 < 0.001 1 2017 2017
dbSNP: rs7767581
rs7767581
HLA-B ; HLA-C
1.000 0.120 6 31272078 5 prime UTR variant C/G;T snv 0.73
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis 		0.700 1.000 1 2011 2011
dbSNP: rs9264636
rs9264636
HLA-B ; HLA-C
1.000 0.120 6 31270520 intron variant C/T snv 0.73 1.2E-02
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis 		0.700 1.000 1 2011 2011
dbSNP: rs708035
rs708035
IRAK2
0.925 0.120 3 10234479 missense variant T/A snv 0.73 0.70
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis 		0.010 1.000 1 2018 2018